Global phylogeography and evolutionary history of Shigella dysenteriae type 1

F. Weill; E. Njamkepo; N. Fawal; A. Tran-Dien; J. Hawkey; N. Strockbine; C. Jenkins; K. Talukder; R. Bercion; K. Kuleshov; R. Kolínská; J. Russell; L. Kaftyreva; M. Accou-Demartin; A. Karas; O. Vandenberg; A. Mather; C. Mason; A. Page; T. Ramamurthy; C. Bizet; A. Gamian; I. Carle; A. Sow; C. Bouchier; A. Wester; M. Lejay-Collin; M. Fonkoua; H. Le; M. Blaser; C. Jernberg; C. Ruckly; A. Mérens; A. Page; M. Aslett; P. Roggentin; A. Fruth; E. Denamur; M. Venkatesan; H. Bercovier; L. Bodhidatta; C. Chiou; D. Clermont; B. Colonna; S. Egorova; G. Pazhani; A. Ezernitchi; G. Guigon; S. Harris; H. Izumiya; A. Korzeniowska-Kowal; A. Lutyhska; M. Gouali; F. Grimont; C. Langendorf; M. Marejková; L. Peterson; G. Perez-Perez; A. Ngandjio; A. Podkolzin; E. Souche; M. Makarova; G. Shipulin; C. Ye; H. Žemličková; M. Herpay; P. Grimont; J. Parkhill; P. Sansonetti; K. Holt; S. Brisse; N. Thomson

Статья

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

F. Weill, E. Njamkepo, N. Fawal, A. Tran-Dien, J. Hawkey, N. Strockbine, C. Jenkins, K. Talukder, R. Bercion, K. Kuleshov, R. Kolínská, J. Russell, L. Kaftyreva, M. Accou-Demartin, A. Karas, O. Vandenberg, A. Mather, C. Mason, A. Page, T. Ramamurthy, C. Bizet, A. Gamian, I. Carle, A. Sow, C. Bouchier, A. Wester, M. Lejay-Collin, M. Fonkoua, H. Le, M. Blaser, C. Jernberg, C. Ruckly, A. Mérens, A. Page, M. Aslett, P. Roggentin, A. Fruth, E. Denamur, M. Venkatesan, H. Bercovier, L. Bodhidatta, C. Chiou, D. Clermont, B. Colonna, S. Egorova, G. Pazhani, A. Ezernitchi, G. Guigon, S. Harris, H. Izumiya, A. Korzeniowska-Kowal, A. Lutyhska, M. Gouali, F. Grimont, C. Langendorf, M. Marejková, L. Peterson, G. Perez-Perez, A. Ngandjio, A. Podkolzin, E. Souche, M. Makarova, G. Shipulin, C. Ye, H. Žemličková, M. Herpay, P. Grimont, J. Parkhill, P. Sansonetti, K. Holt, S. Brisse, N. Thomson,

2021

https://doi.org/10.1038/NMICROBIOL.2016.27

Together with plague, smallpox and typhus, epidemics of dysentery have been a major scourge of human populations for centuries1. A previous genomic study concluded that Shigella dysenteriae type 1 (Sd1), the epidemic dysentery bacillus, emerged and spread worldwide after the First World War, with no clear pattern of transmission2. This is not consistent with the massive cyclic dysentery epidemics reported in Europe during the eighteenth and nineteenth centuries1,3,4 the first isolation of Sd1 in Japan in 18975. Here, we report a whole-genome analysis of 331 Sd1 isolates from around the world, collected between 1915 and 2011, providing us with unprecedented insight into the historical spread of this pathogen. We show here that Sd1 has existed since at least the eighteenth century and that it swept the globe at the end of the nineteenth century, diversifying into distinct lineages associated with the First World War, Second World War and various conflicts or natural disasters across Africa, Asia and Central America. We also provide a unique historical perspective on the evolution of antibiotic resistance over a 100-year period, beginning decades before the antibiotic era, and identify a prevalent multiple antibiotic-resistant lineage in South Asia that was transmitted in several waves to Africa, where it caused severe outbreaks of disease. © 2016 Macmillan Publishers Limited. All rights reserved.

Цитирование

Документы

Источник

Версии

1. Version of Record от 2021-04-27

Метаданные

Об авторах

F. Weill
Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris Cedex 15, 75724, France
E. Njamkepo
Centre for Systems Genomics, University of Melbourne, Parkville, VIC 3010, Australia
N. Fawal
Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC 3010, Australia
A. Tran-Dien
School of Agriculture and Veterinary Science, University of Melbourne, Parkville, VIC 3010, Australia
J. Hawkey
Centers for Disease Control and Prevention, Escherichia and Shigella Reference Unit, Atlanta, GA 30333, United States
N. Strockbine
Public Health England, Gastrointestinal Bacteria Reference Unit, Colindale, NW9 5HT, United Kingdom
C. Jenkins
icddr,b, Enteric and Food Microbiology Laboratory, Dhaka, 1212, Bangladesh
K. Talukder
Institut Pasteur de Bangui, BP 923, Bangui, Central African Republic
R. Bercion
Institut Pasteur de Dakar, BP 220, Dakar, Senegal
K. Kuleshov
Federal Budget Institute of Science, Central Research Institute for Epidemiology, Moscow, 111123, Russian Federation
R. Kolínská
Czech National Collection of Type Cultures (CNCTC), National Institute of Public Health, Prague 10, Czech Republic
J. Russell
Public Health England, National Collection of Type Cultures, Porton Down, SP4 0JG, United Kingdom
L. Kaftyreva
Pasteur Institute of St. Petersburg, St.-Petersburg, 197101, Russian Federation
M. Accou-Demartin
Department of Medical Microbiology, University of KwaZulu-Natal, Durban, 4041, South Africa
A. Karas
Department of Microbiology, LHUB-ULB, Brussels University Hospitals Laboratory, Brussels, 1000, Belgium
O. Vandenberg
Environmental Health Research Centre, Public Health School, Université Libre de Bruxelles, Brussels, 1070, Belgium
A. Mather
Wellcome Trust Sanger Institute, Cambridge, CB10 1SA, United Kingdom
C. Mason
Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, United Kingdom
A. Page
Armed Forces Research Institute of Medical Sciences (AFRIMS), Bangkok, 10400, Thailand
T. Ramamurthy
National Institute of Cholera and Enteric Diseases (NICED), Kolkata, West Bengal 700010, India
C. Bizet
Institut Pasteur, Collection de l'Institut Pasteur (CIP), Paris Cedex 15, 75724, France
A. Gamian
Polish Collection of Microorganisms, Institute of Immunology and Experimental Therapy, Wroclaw, 53-114, Poland
I. Carle
Institut Pasteur, Plate-forme Génomique (PF1), Paris Cedex 15, 75724, France
A. Sow
Department of Foodborne Infections, Norwegian Institute of Public Health, Nydalen, Oslo, 0403, Norway
C. Bouchier
Centre Pasteur du Cameroun, BP 1274, Yaoundé, Cameroon
A. Wester
Department of Medicine and Microbiology, New York University Langone Medical Center, New York, NY 10016, United States
M. Lejay-Collin
Public Health Agency of Sweden, Solna, 17182, Sweden
M. Fonkoua
Biology Department and Infection Control Unit, Bégin Military Hospital, Saint-Mandé, 94160, France
H. Le
Epicentre, Paris, 75011, France
M. Blaser
Institut für Hygiene und Umwelt, Hamburg, 20539, Germany
C. Jernberg
Divison of Enteropathogenic Bacteria and Legionella, Robert Koch Institut, Wernigerode, 38855, Germany
C. Ruckly
INSERM, IAME, UMR 1137, Univ. Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, 75018, France
A. Mérens
Bacterial Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD 20910, United States
A. Page
Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, 91120, Israel
M. Aslett
Center of Research and Diagnostics, Centers for Disease Control, Taichung, 40855, Taiwan
P. Roggentin
Istituto Pasteur-Fondazione Cenci Bolognetti, Dipartimento di Biologia e Biotecnologie C Darwin, Sapienza Università di Roma, Rome, 00185, Italy
A. Fruth
Central Laboratories, Ministry of Health, Jerusalem, 91342, Israel
E. Denamur
Institut Pasteur, Genotyping of Pathogens and Public Health Platform, Paris Cedex 15, 75724, France
M. Venkatesan
Department of Bacteriology I, National Institute of Infectious Diseases, Tokyo, 162-8640, Japan
H. Bercovier
Department of Sera and Vaccines Evaluation, National Institute of Public Health, National Institute of Hygiene, Warsaw, 00-791, Poland
L. Bodhidatta
National Reference Laboratory for E. coli and Shigella, National Institute of Public Health, Prague 10, Czech Republic
C. Chiou
National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
D. Clermont
Institut Pasteur, Bioinformatics Platform, Paris Cedex 15, 75724, France
B. Colonna
State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, China CDC, Beijing, 102206, China
S. Egorova
Department of Clinical Microbiology, Faculty of Medicine and University Hospital, Charles University, Hradec Kralove, 500 05, Czech Republic
G. Pazhani
Hungarian National Collection of Medical Bacteria, National Center for Epidemiology, Budapest, H-1097, Hungary
A. Ezernitchi
Institut Pasteur, Unité de Pathogénie Microbienne Moléculaire, Paris Cedex 15, 75724, France
G. Guigon
Institut Pasteur, Microbial Evolutionary Genomics Unit, Paris Cedex 15, 75724, France
S. Harris
CNRS, UMR 3525, Paris, 75015, France
H. Izumiya
London School of Hygiene and Tropical Medicine, London, WC1E 7HT, United Kingdom
A. Korzeniowska-Kowal
A. Lutyhska
M. Gouali
F. Grimont
C. Langendorf
M. Marejková
L. Peterson
G. Perez-Perez
A. Ngandjio
A. Podkolzin
E. Souche
M. Makarova
G. Shipulin
C. Ye
H. Žemličková
M. Herpay
P. Grimont
J. Parkhill
P. Sansonetti
K. Holt
S. Brisse
N. Thomson

Название журнала

Nature Microbiology

Том

Выпуск

Страницы

Ключевые слова

antibiotic resistance; bacterial genome; classification; DNA sequence; genetics; global health; history; human; isolation and purification; microbiology; molecular epidemiology; molecular evolution; phylogeography; serotype; Shigella dysenteriae; shigellosis; Drug Resistance, Bacterial; Dysentery, Bacillary; Evolution, Molecular; Genome, Bacterial; Global Health; History, 19th Century; History, 20th Century; History, 21st Century; Humans; Molecular Epidemiology; Phylogeography; Sequence Analysis, DNA; Serogroup; Shigella dysenteriae

Издатель

Nature Publishing Group

Тип документа

journal article

Тип лицензии Creative Commons

Правовой статус документа

Свободная лицензия

Источник

scopus

Поиск по репозиторию

Статья

Global phylogeography and evolutionary history of Shigella dysenteriae type 1

Похожие публикации

Документы

Источник

Версии

Метаданные