Статья

Candidate SNP-markers of rheumatoid arthritis that can significantly alter the affinity of the TATA-binding protein for human gene promoters

I. Chadaeva, D. Rasskazov, E. Sharypova, I. Drachkova, E. Oshchepkova, L. Savinkova, P. Ponomarenko, M. Ponomarenko, N. Kolchanov, V. Kozlov,
2021

Rheumatoid polyarthritis (RA) is an autoimmune disease with autoantibodies, including antibodies to citrullant antigens and proinflammatory cytokines, such as TNF-a and IL-6, which are involved in the induction of chronic synovitis, bone erosion, followed by deformity. Immunopathogenesis is based on the mechanisms of the breakdown of immune tolerance to its own antigens, which is characterized by an increase in the activity of T-effector cells, causing RA symptomatology. At the same time, against the background of such increased activity of effector lymphocytes, a decrease in the activity of a number of regulatory cells, including regulatory T-cells (Treg) and myeloid suppressor cells, is recorded. There is reason to say that it is the change in the activity of suppressor cells that is the leading element in RA pathogenesis. That is why only periods of weakening (remission) of RA are spoken of. According to the more powerful female immune system compared to the male one, the risk of developing RA in women is thrice as high, this risk decreases during breastfeeding and grows during pregnancy as well as after menopause in proportion to the level of sex hormones. It is believed that 50 % of the risk of developing RA depends on the conditions and lifestyle, while the remaining 50 % is dependent on genetic predisposition. That is why, RA fits the main idea of postgenomic predictive-preventive personalized medicine that is to give a chance to those who would like to reduce his/her risk of diseases by bringing his/her conditions and lifestyle in line with the data on his/her genome sequenced. This is very important, since doctors consider RA as one of the most frequent causes of disability. Using the Web service SNP_TATA_Z-tester (http://beehive.bionet.nsc.ru/cgi-bin/mgs/tatascan_fox/start.pl), 227 variants of single nucleotide polymorphism (SNP) of the human gene promoters were studied. As a result, 43 candidate SNP markers for RA that can alter the affinity of the TATA-binding protein (TBP) for the promoters of these genes were predicted. © 2019 Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences. All rights reserved.

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  • 1. Version of Record от 2021-04-27

Метаданные

Об авторах
  • I. Chadaeva
    Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russian Federation
  • D. Rasskazov
    Novosibirsk State University, Novosibirsk, Russian Federation
  • E. Sharypova
    University of la Verne, La Verne, CA, United States
  • I. Drachkova
    Research Institute of Fundamental and Clinical Immunology, Novosibirsk, Russian Federation
  • E. Oshchepkova
  • L. Savinkova
  • P. Ponomarenko
  • M. Ponomarenko
  • N. Kolchanov
  • V. Kozlov
Название журнала
  • Vavilovskii Zhurnal Genetiki i Selektsii
Том
  • 23
Выпуск
  • 8
Страницы
  • 1047-1058
Издатель
  • Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences
Тип документа
  • journal article
Тип лицензии Creative Commons
  • CC
Правовой статус документа
  • Свободная лицензия
Источник
  • scopus