Статья

Scanbious: Survey for obesity genes using pubmed abstracts and disgenet

S. Tarbeeva, E. Lyamtseva, A. Lisitsa, A. Kozlova, E. Ponomarenko, E. Ilgisonis,
2021

We used automatic text-mining of PubMed abstracts of papers related to obesity, with the aim of revealing that the information used in abstracts reflects the current understanding and key concepts of this widely explored problem. We compared expert data from DisGeNET to the results of an automated MeSH (Medical Subject Heading) search, which was performed by the ScanBious web tool. The analysis provided an overview of the obesity field, highlighting major trends such as physiological conditions, age, and diet, as well as key well-studied genes, such as adiponectin and its receptor. By intersecting the DisGeNET knowledge with the ScanBious results, we deciphered four clusters of obesity-related genes. An initial set of 100+ thousand abstracts and 622 genes was reduced to 19 genes, distributed among just a few groups: heredity, inflammation, intercellular signaling, and cancer. Rapid profiling of articles could drive personalized medicine: if the disease signs of a particular person were superimposed on a general network, then it would be possible to understand which are non-specific (observed in cohorts and, therefore, most likely have known treatment solutions) and which are less investigated, and probably represent a personalized case.

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  • 1. Version of Record от 2021-04-01

Метаданные

Об авторах
  • S. Tarbeeva
    Sechenov First Moscow State Medical University, V.N. Orekhovich Research Institute of Biomedical Chemistry, Russian Academy of Medical Sciences
  • E. Lyamtseva
    University of Tyumen
  • A. Lisitsa
    V.N. Orekhovich Research Institute of Biomedical Chemistry, Russian Academy of Medical Sciences
  • A. Kozlova
    V.N. Orekhovich Research Institute of Biomedical Chemistry, Russian Academy of Medical Sciences, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences
  • E. Ponomarenko
    V.N. Orekhovich Research Institute of Biomedical Chemistry, Russian Academy of Medical Sciences
  • E. Ilgisonis
    V.N. Orekhovich Research Institute of Biomedical Chemistry, Russian Academy of Medical Sciences
Название журнала
  • Journal of Personalized Medicine
Том
  • 11
Выпуск
  • 4
Финансирующая организация
  • Russian Foundation for Basic Research
Номер гранта
  • 075-15-2019-1502
Тип документа
  • journal article
Тип лицензии Creative Commons
  • CC BY
Правовой статус документа
  • Свободная лицензия
Источник
  • scopus