Статья

Phylogenetic distribution of extracellular guanyl-preferring ribonucleases renews taxonomic status of two bacillus strains

V. Ulyanova, M. Shah, E. Dudkina, V. Vershinina, E. Domann, O. Ilinskaya,
2021

The potential of microbial ribonucleases as promising antitumor and antiviral agents, determines today’s directions of their study. One direction is connected with biodiversity of RNases. We have analyzed completed and drafted Bacillus genomes deposited in GenBank for the presence of coding regions similar to the gene of an extracellular guanyl-preferring RNase of Bacillus amyloliquefaciens (barnase). Orthologues of the barnase gene were detected in 9 species out of 83. All of these belong to “B. subtilis” group within the genus. B. subtilis itself, as well as some other species within this group, lack such types of RNases. RNases similar to barnase were also found in species of “B. cereus” group as a part of plasmid-encoded S-layer toxins. It was also found that taxonomic states of culture collection strains, which were initially described based on a limited set of phenotypic characteristics, can be misleading and need to be confirmed. Using several approaches such as matrix-assisted laser desorption ionizationtime of flight mass spectrometry (MALDI-TOF MS), sequencing of genes for 16S ribosomal RNA and RNA polymerase subunit beta followed by reconstruction of phylogenetic trees, we have re-identified two RNase-secreting Bacillus strains: B. thuringiensis B-388 which should be assigned as B. altitudinis B388 and B. intermedius 7P which should be renamed as B. pumilus 7P. Therefore, small secreted guanyl-preferring RNases are the feature of “B. subtilis” group only, which is characterized by distinctive lifestyle and adaptation strategies to environment. © 2016 Applied Microbiology, Molecular and Cellular Biosciences Research Foundation.

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  • 1. Version of Record от 2021-04-27

Метаданные

Об авторах
  • V. Ulyanova
    Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, 420008, Russian Federation
  • M. Shah
    Institute for Medical Microbiology, German Center of Infection Research (DZIF), Justus-Liebig-University, Giessen, D-35392, Germany
  • E. Dudkina
  • V. Vershinina
  • E. Domann
  • O. Ilinskaya
Название журнала
  • Journal of General and Applied Microbiology
Том
  • 62
Выпуск
  • 4
Страницы
  • 181-188
Ключевые слова
  • barnase; ribonuclease; RNA 16S; RNA polymerase beta subunit; Bacillus amyloliquefaciens ribonuclease; bacterial DNA; guanine; ribonuclease; RNA 16S; Article; Bacillus; Bacillus altitudinis; Bacillus amyloliquefaciens; Bacillus intermedius; Bacillus pumilus; Bacillus subtilis; Bacillus thuringiensis; bacterial genome; bacterial strain; controlled study; enzyme analysis; gene sequence; matrix assisted laser desorption ionization time of flight mass spectrometry; nonhuman; phenotype; phylogeny; plasmid; RNA gene; taxonomy; amino acid sequence; Bacillus; classification; DNA sequence; enzymology; genetics; isolation and purification; matrix-assisted laser desorption-ionization mass spectrometry; metabolism; nucleotide sequence; procedures; secretion (process); Amino Acid Sequence; Bacillus; Bacillus amyloliquefaciens; Bacillus pumilus; Bacillus thuringiensis; Base Sequence; Classification; DNA, Bacterial; Genome, Bacterial; Guanine; Phylogeny; Ribonucleases; RNA, Ribosomal, 16S; Sequence Analysis, DNA; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Издатель
  • Microbiology Research Foundation
Тип документа
  • journal article
Источник
  • scopus