Статья

Multi-omics-based identification of SARS-CoV-2 infection biology and candidate drugs against COVID-19

D. Barh, S. Tiwari, M. Weener, V. Azevedo, A. Góes-Neto, M. Gromiha, P. Ghosh,
2021

SARS-CoV-2 has ushered a global pandemic with no effective drug being available at present. Although several FDA-approved drugs are currently under clinical trials for drug repositioning, there is an on-going global effort for new drug identification. In this paper, using multi-omics (interactome, proteome, transcriptome, and bibliome) data and subsequent integrated analysis, we present the biological events associated with SARS-CoV-2 infection and identify several candidate drugs against this viral disease. We found that: (i) Interactome-based infection pathways differ from the other three omics-based profiles. (ii) Viral process, mRNA splicing, cytokine and interferon signaling, and ubiquitin mediated proteolysis are important pathways in SARS-CoV-2 infection. (iii) SARS-CoV-2 infection also shares pathways with Influenza A, Epstein-Barr virus, HTLV-I, Measles, and Hepatitis virus. (iv) Further, bacterial, parasitic, and protozoan infection pathways such as Tuberculosis, Malaria, and Leishmaniasis are also shared by this virus. (v) A total of 50 candidate drugs, including the prophylaxis agents and pathway specific inhibitors are identified against COVID-19. (vi) Betamethasone, Estrogen, Simvastatin, Hydrocortisone, Tositumomab, Cyclosporin A etc. are among the important drugs. (vii) Ozone, Nitric oxide, plasma components, and photosensitizer drugs are also identified as possible therapeutic candidates. (viii) Curcumin, Retinoic acids, Vitamin D, Arsenic, Copper, and Zinc may be the candidate prophylaxis agents. Nearly 70% of our identified agents are previously suggested to have anti-COVID-19 effects or under clinical trials. Among our identified drugs, the ones that are not yet tested, need validation with caution while an appropriate drug combination from these candidate drugs along with a SARS-CoV-2 specific antiviral agent is needed for effective COVID-19 management. © 2020 Elsevier Ltd

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  • 1. Version of Record от 2021-04-27

Метаданные

Об авторах
  • D. Barh
    Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur, WB, India
  • S. Tiwari
    Laboratório de Genética Celular e Molecular, Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
  • M. Weener
    Clinical Research Center, Oftalmic, CRO, Bardina Str.22/4, Moscow, 119334, Russian Federation
  • V. Azevedo
    Laboratório de Biologia Molecular e Computacional de Fungos, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Minas Gerais, Brazil
  • A. Góes-Neto
    Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras (IIT-M), Chennai, 600036, India
  • M. Gromiha
    Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, United States
  • P. Ghosh
Название журнала
  • Computers in Biology and Medicine
Том
  • 126
Страницы
  • -
Ключевые слова
  • Antiviral agents; Nitric oxide; Photosensitizers; Viruses; Candidate drugs; Drug combinations; Drug identification; Drug repositioning; Epstein-Barr virus; Integrated analysis; Specific inhibitors; Ubiquitin-mediated proteolysis; Diseases; antivirus agent; arsenic; betamethasone; brigatinib; convalescent plasma; copper; curcumin; cyclosporine; cytokine; doxorubicin; estrogen; etoposide; genistein; hydrocortisone; imatinib; insulin; interferon; nitric oxide; ozone; photosensitizing agent; resveratrol; retinoic acid; rosiglitazone; simvastatin; streptozocin; tositumomab; ubiquitin; unindexed drug; vitamin D; zinc; antivirus agent; antiviral activity; Article; bibliometrics; coronavirus disease 2019; drug efficacy; drug repositioning; Epstein Barr virus; hepatitis virus; Human T-lymphotropic virus 1; Influenza A virus; interactomics; leishmaniasis; malaria; Measles virus; multiomics; priority journal; prophylaxis; protein degradation; proteomics; RNA splicing; Severe acute respiratory syndrome coronavirus 2; signal transduction; transcriptomics; tuberculosis; virus identification; Betacoronavirus; biological model; chemistry; Coronavirus infection; drug development; genetic database; genetics; human; metabolism; pandemic; virus pneumonia; Antiviral Agents; Betacoronavirus; Coronavirus Infections; Databases, Genetic; Drug Discovery; Humans; Models, Biological; Pandemics; Pneumonia, Viral; Proteomics
Издатель
  • Elsevier Ltd
Тип документа
  • journal article
Тип лицензии Creative Commons
  • CC
Правовой статус документа
  • Свободная лицензия
Источник
  • scopus